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PhyloTree.org -
mtDNA tree Build 17 (18 Feb 2016): subtree R9 |
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Citation: van Oven M, Kayser M.
2009. Updated comprehensive phylogenetic tree of global human mitochondrial
DNA variation. Hum Mutat 30(2):E386-E394. |
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Nucleotide position numbers are consistent
with both the rCRS and the RSRS reference sequences. |
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Mutations are given in forward evolutionary
time direction in the format [ancestral base][position number][derived base],
e.g. "G15043A". |
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In case of a transversion, the derived allele
is shown in lowercase instead of uppercase, e.g. "C5178a". |
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Insertions are indicated by the position
number preceding the insertion followed by a dot (.), the relative insert
position, and the inserted base(s), e.g. "2156.1A". |
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Deletions are indicated by the letter
"d" following the (range of) position number(s) involved, e.g.
"A249d" or "8281-8289d". |
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Mutations that are reversions to an ancestral
state (back mutations) are indicated with an exclamation mark (!), two
exclamation marks for a double back mutation (!!), etc., e.g.
"A15301G!". |
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Coding-region mutations (np 577-16023) are
shown in black; control-region mutations (np 16024-576) in blue. |
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Mutations between brackets () are
recurrent/unstable within the respective clade, or are yet uncertain based on
current data. |
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Mutation motifs in italic are preliminary and are likely to be further refined as
additional sequences become available. |
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The mutations 309.1C(C), 315.1C, AC indels at
515-522, A16182c, A16183c, 16193.1C(C) and C16519T/T16519C were not
considered for phylogenetic reconstruction and are therefore excluded from
the tree. |
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Accession numbers provided at the tips of
branches are representative examples of mtDNA sequences available at GenBank
or from individuals included in HapMap/1000Genomes. |
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It may be convenient to use the Find function
(Ctrl+F) of your browser to search for a particular mutation or haplogroup. |
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Example accessions |
mt-MRCA (RSRS) |
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L1'2'3'4'5'6 |
C146T
C182T
T4312C T10664C C10915T
A11914G G13276A G16230A |
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L2'3'4'5'6 |
C152T A2758G
C2885T G7146A T8468C |
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L2'3'4'6 |
C195T
A247G
A825t T8655C A10688G
C10810T G13105A T13506C
G15301A A16129G
T16187C C16189T |
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L3'4'6 |
G4104A
A7521G |
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L3'4 |
T182C! T3594C
T7256C T13650C T16278C |
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L3 |
A769G
A1018G C16311T |
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N |
G8701A
C9540T G10398A C10873T
A15301G! |
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R |
T12705C
T16223C |
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R0 |
G73A A11719G |
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HV |
T14766C |
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H |
G2706A
T7028C |
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H2 |
G1438A |
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H2a |
G4769A |
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H2a2 |
G750A |
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H2a2a |
G8860A
G15326A |
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H2a2a1 |
G263A |
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rCRS |
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R9 |
C3970T
G13928c T16304C |
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R9b |
T1541C |
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KC505122 |
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R9b1 |
T12714C
A16309G
G16390A |
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KF849983 |
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R9b1a |
A183G
C16192T |
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R9b1a1 |
G143A C4017T
C7849T |
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GU733737 |
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R9b1a1a |
T16288C |
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DQ981466 |
DQ981472 |
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R9b1a2 |
C10736T |
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KF541026 |
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R9b1a2a |
A12172G
G16145A
T16243C |
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DQ981471 |
FJ147308 |
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R9b1a2b |
T6620C |
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JN580298 |
KF540702 |
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R9b1a3 |
C3204T
G3316A T6815C |
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DQ981469 |
JF824932 |
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R9b1b |
C2322a
T16124C
C16148T |
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DQ981470 |
EF114273 |
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R9b2 |
G3666A
A6647G A8724G T11299C
C11422T T13191C A13722G
G15314A G15883A T16362C |
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GU810062 |
DQ981475 |
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R9c |
T7861C
A11002G T15479C |
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JN857032 |
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R9c1 |
T16157C |
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R9c1a |
A249d G951A
G6446A A8440G C11308T
C14227T G15734A C16256T A16335G |
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GQ119010 |
KC994068 |
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R9c1a1 |
G1462A |
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HQ700872 |
KF540867 |
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R9c1a2 |
C11197T |
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KF541011 |
KF540625 |
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R9c1a3 |
C12123T |
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JF739535 |
JF739539 |
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R9c1b |
G12618A |
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R9c1b1 |
C151T
A479G
T7684C |
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JX289135 |
HG00407 |
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R9c1b2 |
A7299G
G12406A |
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KF540813 |
KC994001 |
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F |
A249d T6392C
G10310A |
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F1 |
G6962A
T10609C G12406A C12882T |
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F1a'c'f |
G9053A
G13759A G16129A! |
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F1a |
C4086T
T16172C |
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NA17963 |
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F1a1'4 |
G9548A |
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F1a1 |
A16162G |
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AP008906 |
AP008667 |
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F1a1a |
A8149G
C16108T |
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HM357817 |
AY255175 |
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F1a1a1 |
C11215T |
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AY963572 |
AY195791 |
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F1a1b |
C64T A14002G |
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AP008347 |
AP008279 |
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F1a1c |
C548T C10211T |
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NA18620 |
HM357820 |
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F1a1c1 |
T195C! G3666A
A10283G T16224C |
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GU810005 |
GU810022 |
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F1a1c2 |
G15314A
T15629C |
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AP008475 |
NA19078 |
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F1a1c3 |
G2706A
A6098G |
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NA18606 |
NA18569 |
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F1a1d |
A11380G
A16399G |
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GQ119028 |
KF849953 |
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F1a1d1 |
A10042G
G14305A |
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HM238209 |
HM238211 |
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F1a4 |
T15445C |
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F1a4a |
T152C! G5985A
T16362C |
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NA18132 |
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F1a4a1 |
T8277C
A13422G C16294T |
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KC994022 |
HM238204 |
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F1a4b |
T466C G8251A |
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JF824826 |
KC733251 |
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F1a2 |
T10034C
A16129G!! |
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FJ748725 |
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F1a2a |
C16465T |
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KF849920 |
DQ272124 |
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F1a3 |
T15565C |
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T16311C! |
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KF540917 |
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F1a3a |
G9554A
T9944C A13748G |
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JF739536 |
KC993954 |
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F1a3a1 |
A16129G!!
G16390A |
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KF540654 |
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F1a3a1a |
T8705C
A16284G |
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AP008701 |
AP008679 |
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F1a3a2 |
C150T C4011T
T16189C! |
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KC994062 |
HM238199 |
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F1a3a3 |
C15452T |
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KC994075 |
HM238205 |
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F1a3a3a |
G14323A |
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KF540619 |
KF541018 |
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F1a3b |
G53A
G54c T318C A8718G C13044T |
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NA17977 |
KF540845 |
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F1c |
G709A
T10454C |
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AP010738 |
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F1c1 |
T152C! A6599G |
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AP008616 |
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F1c1a |
C16111T |
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F1c1a1 |
C16266T |
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AY255177 |
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F1c1a1a |
T9647C |
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KF056261 |
FJ748754 |
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F1c1a1b |
T8772C |
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KF849932 |
HG00472 |
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F1c1a2 |
G1927A |
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FJ748720 |
JX462682 |
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F1f |
A4715G
T6515C G12771A |
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AP012346 |
JF824974 |
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T16189C! |
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F1b |
T152C! C10976T
C12633T G14476A C16232a T16249C
T16311C! |
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F1b1 |
A4732G
G5147A |
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F1b1a |
G16129A!
C16344T |
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AP008498 |
NA19059 |
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F1b1a1 |
A15954G |
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AP008591 |
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F1b1a1a |
C5049T |
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AP008421 |
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F1b1a1a1 |
T4705C |
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AP008919 |
AP010731 |
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F1b1a1a1a |
C14103a |
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AP009474 |
AP008820 |
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F1b1a1a2 |
A9389G |
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AP010754 |
AP008490 |
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F1b1a1a3 |
A15193G |
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AP013115 |
AP008864 |
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F1b1a2 |
C14629T |
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AP008577 |
AP010975 |
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F1b1b |
T204C T8772C
T16172C |
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DQ272125 |
HM852871 |
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F1b1c |
T5508C
T10235C T12633C! C16311T!! |
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FJ198216 |
KF849982 |
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C152T!! |
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HM036531 |
HQ108344 |
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F1b1d |
A153G C15459T |
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AP013215 |
AP008446 |
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F1b1e |
G1709t
T8104C |
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HQ405768 |
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F1b1e1 |
T3202C
A9007G |
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KF148437 |
KF148087 |
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F1b1f |
T10045C |
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KF148222 |
JF824901 |
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F1d |
T146C! C1734T
T5628C T7738C C15402T |
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AP008808 |
HG00530 |
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F1d1 |
G13135A |
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AP008328 |
NA18603 |
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F1e |
T5587C
G15024A |
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F1e1 |
G12618A |
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HG00437 |
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F1e1a |
T3027C
T10007C T13260C C13749T
C15022T A15496G C16355T |
AP008508 |
AP010837 |
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F1e2 |
A189G
T195C!
T9078C C11326T T14218C
C16234T C16242T |
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EU597547 |
GU392056 |
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F1e3 |
C150T
A16300G |
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KF849952 |
HG00442 |
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F1g |
C2389T
T3398C |
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JN133516 |
JF824890 |
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F1g1 |
T3621C |
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GU392087 |
FJ748713 |
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F2 |
T1005C
T1824C A7828G T10535C
G10586A T12338C G13708A |
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C16291T |
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F2a |
A16203G |
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AP008692 |
KF849969 |
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T16291C! |
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NA18598 |
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F2a1 |
T10810C! |
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AY255168 |
KF540771 |
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F2b |
A4811G |
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AY255180 |
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F2b1 |
T16092a |
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NA18790 |
JF824880 |
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F2g |
A747G |
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HM036555 |
KF849899 |
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F2c |
A13722G |
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KF849911 |
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F2c1 |
G11150A
T16189C! |
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JF824941 |
AP010683 |
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F2c2 |
A761G
A5978G C6156T G6570t
G8152A A14133G C15418T
C16067T
T16271C |
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NA18583 |
NA18609 |
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F2d |
A235G C1009T
C16304T! |
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AP013247 |
GU392094 |
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F2e |
A2281G
G3010A A14769G |
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NA18629 |
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F2e1 |
C64T
A153G
G4820A G8020A T8473C
C13782a C16260T |
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JN857034 |
KF849967 |
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F2f |
T11339C |
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AP013271 |
JF824818 |
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T195C! |
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F2h |
G9612c
A10005G G11696A A14002G
G14560A T15862C |
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GQ999958 |
FJ748736 |
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F2i |
T152C!
G275A
T3753C T10084C C11323T
T11410C C16221T |
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KF849909 |
KF540840 |
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F3 |
A3434G
G5585A G5913A A5978G
G10320A A11065G T16298C C16304T!
T16362C |
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F3a |
C12621T
C16355T |
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AY255167 |
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G207A |
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JF824855 |
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F3a1 |
G709A
A5894G T14971C C16260T |
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KF849966 |
NA18759 |
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F3b |
G9947A
A16220c |
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AP013180 |
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T152C! |
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AY972053 |
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F3b1 |
C150T C5076T
G8838A G11065A! T15784C
A16265G |
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F3b1a |
A6791G T16311C! |
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T16093C |
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KC994154 |
GQ119009 |
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F3b1a1 |
G16274A |
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KC993991 |
GQ119011 |
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F3b1a2 |
C152T!!
G16265A! |
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GQ119015 |
KF540752 |
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F3b1b |
5899.XC
T8337C A14133G |
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JF739538 |
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F3b1b1 |
A14013G |
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KC994125 |
KC994009 |
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F4 |
C5263T
G12630A T15670C |
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F4a |
T146C!
T152C!
T3290C T10915C! A16207G A16399G |
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F4a1 |
C12153T
T13602C T16362C |
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F4a1a |
G207A T7861C
A11038G T12396C T12408C
A16497G |
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AP008744 |
EU597565 |
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F4a1b |
C152T!!
C317a
G3316A T7561C T16126C |
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AP013200 |
AF346973 |
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F4a2 |
A281G T11776C
A12612G G14016A T15908C |
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NA18691 |
JF824892 |
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F4b |
573.XC C6653T
G8020A C8575T T8603C
C16218T T16311C! |
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NA18592 |
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F4b1 |
A10097c |
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AY289095 |
KF540575 |
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