| PhyloTree.org - mtDNA subtree L3 | |||||||||||||||||||
| Citation: van Oven M, Kayser M. 2009. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum Mutat 30(2):E386-E394. doi:10.1002/humu.20921 | |||||||||||||||||||
| Nucleotide position numbers are relative to the RSRS and rCRS. Mutations are given in forward evolutionary time direction. In case of a transversion the derived allele is shown in lowercase. | |||||||||||||||||||
| Coding region mutations (np 577-16023) are shown in black; control region mutations (np 16024-576) in blue. | |||||||||||||||||||
| Back mutations to an ancestral state are indicated with an exclamation mark (!), two exclamation marks for a double back mutation (!!), etc. | |||||||||||||||||||
| Mutations between brackets () are recurrent/unstable within the respective clade, or are yet uncertain based on current data. | |||||||||||||||||||
| Mutation motifs in italic are preliminary and are likely to be further refined as additional sequences become available. | |||||||||||||||||||
| The mutations 309.1C(C), 315.1C, AC indels at 515-522, 16182C, 16183C, 16193.1C(C) and 16519 were not considered for phylogenetic reconstruction and are therefore excluded from the tree. | |||||||||||||||||||
| Accession numbers provided at the tips of branches are representative examples of mtDNA sequences available at GenBank or from individuals included in HapMap/1000Genomes. | |||||||||||||||||||
| The references are independent from the accession numbers and refer to publications that have described the corresponding branch and/or have proposed haplogroup nomenclature. | |||||||||||||||||||
| A list of the references cited is available here. | |||||||||||||||||||
| It may be convenient to use the Find function (Ctrl+F) of your browser to search for a particular mutation or haplogroup. | |||||||||||||||||||
| Example accessions | References | ||||||||||||||||||
| L3 | A769G A1018G C16311T | Behar 2008b | |||||||||||||||||
| L3a | T152C! C12816T A16316G | EU092941 | Behar 2008b, Torroni 2006, Soares 2012 | ||||||||||||||||
| L3a1 | T721C C10314T T14461C A14851G G15553A A16254G T16311C! | DQ341081 | JN655813 | ||||||||||||||||
| L3b'f | T15944d | ||||||||||||||||||
| L3b | C3450T G5773A T6221C C9449T A10086G A13105G! C13914a A15311G A15824G T16124C C16278T! T16362C | Behar 2008b | |||||||||||||||||
| L3b1 | G10373A | Behar 2008b | |||||||||||||||||
| L3b1a | A11002G | EU092897 | DQ304991 | Behar 2008b, Torroni 2006 | |||||||||||||||
| L3b1a1 | A11800G | JQ705783 | Behar 2012b | ||||||||||||||||
| L3b1a1a | G15883A | DQ304995 | EU597490 | Behar 2008b | |||||||||||||||
| L3b1a2 | G9300A | JN655827 | EU935449 | Behar 2008b | |||||||||||||||
| L3b1a3 | A13933G T16311C! | FJ460529 | DQ304990 | ||||||||||||||||
| L3b1a4 | A1710c C9605T | FJ460536 | EU092759 | ||||||||||||||||
| L3b1a5 | T5063C | JQ044986 | EU092962 | ||||||||||||||||
| T152C! | JN655790 | ||||||||||||||||||
| L3b1a6 | A3385G C5255T G8155A | EU092958 | JQ045058 | ||||||||||||||||
| C16124T! | EU092768 | JN655791 | |||||||||||||||||
| L3b1a7 | A3441G C5211T A5581G T15299C | DQ341073 | JX666328 | ||||||||||||||||
| L3b1b | T152C! A9079G C15664T | EU092814 | DQ112738 | Behar 2008b, Malyarchuk 2008b ("L3b1a") | |||||||||||||||
| L3b1b1 | T217C | EU092682 | EU200761 | ||||||||||||||||
| L3b2 | C3420T T10640C C16527T | JQ045029 | Behar 2008b | ||||||||||||||||
| L3b2a | T5250C T16189C! | EU092725 | EU935440 | ||||||||||||||||
| L3b3 | G185A A189G A6527G A9007G C13934T T14182C G16048A | JQ704919 | JQ703986 | Behar 2012b | |||||||||||||||
| L3f | T3396C T4218C T15514C T16209C | Torroni 2006, Behar 2008b, Černý 2009 | |||||||||||||||||
| L3f1 | C5601T T9950C | Torroni 2006, Behar 2008b, Černý 2009 | |||||||||||||||||
| L3f1a | G3693A C4350T C5194T A14148G G15106A | EU092891 | Behar 2008b, Černý 2009 | ||||||||||||||||
| L3f1a1 | T3197C A12507G | JN655817 | DQ341078 | ||||||||||||||||
| L3f1b | A189G (A200G) T1822C C7819a A8527G C8932T G11440A A14769G C16292T T16311C! | DQ341077 | GU455422 | Behar 2008b, Černý 2009 | |||||||||||||||
| L3f1b1 | C16295T | JQ044831 | Behar 2008b, Černý 2009 | ||||||||||||||||
| L3f1b1a | C8410T C10070T G16129A! | DQ305036 | JQ704670 | ||||||||||||||||
| L3f1b1a1 | A272G | JX303774 | EU092857 | ||||||||||||||||
| L3f1b2 | C7235a | EU092805 | Behar 2008b, Černý 2009 | ||||||||||||||||
| L3f1b2a | T16172C C16266a | EU935451 | EU092953 | Behar 2008b, Černý 2009 | |||||||||||||||
| C150T | JQ044979 | Behar 2008b, Černý 2009 | |||||||||||||||||
| L3f1b3 | T711C A6806G A7158G | EU092883 | Behar 2008b, Černý 2009 | ||||||||||||||||
| L3f1b4 | A3505G | EU092704 | JQ045093 | Behar 2008b, Černý 2009 | |||||||||||||||
| L3f1b4a | A13167G T16292C! | EU092865 | Behar 2008b, Černý 2009 | ||||||||||||||||
| L3f1b4a1 | A8799G | EU092912 | EU092791 | Behar 2008b, Černý 2009 | |||||||||||||||
| L3f2 | (745.1T) T16311C! | Behar 2008b, Černý 2009 | |||||||||||||||||
| L3f2a | T152C! T15479C | JN655784 | |||||||||||||||||
| L3f2a1 | G5821A C9365T G15314A | DQ341076 | JN655841 | Behar 2008b ("L3j") | |||||||||||||||
| L3f2b | 374.1A T2442C C5342T G11016A T12338C G15466A C15658T | EU092770 | EU092877 | Behar 2008b, Černý 2009 | |||||||||||||||
| L3f3 | A189G T318C C959T G4643A A5181G C6602T A8158G G8251A G9932A T10604C T11770C T15940C C16176T C16234T | FJ625848 | FJ625850 | Behar 2008b, Černý 2009 | |||||||||||||||
| L3f3a | A16284G | FJ625855 | FJ625854 | Černý 2009 | |||||||||||||||
| L3c'd | T152C! A13105G! | Behar 2008b | |||||||||||||||||
| L3c | T195C! 498.1C T678C C3582T G4491A T5393C A7394G T9337C T9682C A12373G T14221C T14371C G14560A A14587G T16311C! T16362C | EU092660 | DQ341074 | Behar 2008b, Torroni 2006 | |||||||||||||||
| L3d | G5147A A7424G T8618C T13886C C14284T T16124C | DQ112884 | Behar 2008b | ||||||||||||||||
| L3d1'2'3'4'5 | T921C | EU092898 | JQ045091 | Behar 2008b, Malyarchuk 2008b ("L3d1") | |||||||||||||||
| L3d1 | T6680C | Behar 2008b | |||||||||||||||||
| L3d1a | G4048A C7648T G11887A | EU092796 | Behar 2008b | ||||||||||||||||
| G16319A | HM771228 | ||||||||||||||||||
| L3d1a1 | G1503A | EU092876 | Behar 2008b | ||||||||||||||||
| L3d1a1a | C150T A4203G G5471A T10640C T10915C! | JN655800 | EU092932 | Behar 2008b | |||||||||||||||
| L3d1b | G5046A | JQ045112 | EU092899 | Behar 2008b | |||||||||||||||
| L3d1b1 | A6272G | DQ341072 | EU200759 | Malyarchuk 2008b, Behar 2008b | |||||||||||||||
| L3d1b1a | A8014c | JN214459 | JN214478 | Cerezo 2012 | |||||||||||||||
| L3d1b2 | C150T T4553C T15514C | JQ702420 | JQ705077 | Behar 2012b | |||||||||||||||
| L3d1b3 | T146C! T14634C G15110A | JQ045051 | |||||||||||||||||
| L3d1b3a | C16256T | JX303821 | JQ044814 | ||||||||||||||||
| L3d1c | A3203G T9111C A11239G C12870T A13542G A16166G | EU092762 | JQ044862 | Behar 2008b | |||||||||||||||
| L3d1c1 | A5372G A9254G | EU092830 | JQ044824 | ||||||||||||||||
| L3d1d | A7765G A9151G (C16256T) (T16368C) | AY195782 | DQ112714 | Behar 2008b | |||||||||||||||
| L3d2 | C14272T T14584C C16111T | JN655793 | Behar 2008b | ||||||||||||||||
| L3d2a | T15115C (T16189C!) | HM771170 | DQ112713 | ||||||||||||||||
| L3d3 | G1719A T4688C A15061G | Behar 2008b | |||||||||||||||||
| L3d3a | C3498g G8251A A10899G A11404G (T16189C) (C16278T) (T16304C) (T16311C) | DQ112716 | Behar 2008b | ||||||||||||||||
| L3d3a1 | A15208G | JX303864 | |||||||||||||||||
| L3d3a1a | T2416C | EU092851 | EU597526 | ||||||||||||||||
| L3d3a1b | G16000A | JX303836 | JX303803 | ||||||||||||||||
| L3d3b | T7389C | JN655797 | AF381998 | ||||||||||||||||
| L3d4 | A189G T195C! | JN655834 | GU455420 | Behar 2008b | |||||||||||||||
| L3d5 | A15799G T16362C | EU597500 | JN214479 | ||||||||||||||||
| L3e'i'k'x | C150T A10819G | Behar 2008b | |||||||||||||||||
| L3e | T2352C T14212C | Behar 2008b | |||||||||||||||||
| L3e1 | A189G A200G T6221C C6587T A14152G T15670C T15942C C16327T | EU092827 | EU092887 | Behar 2008b | |||||||||||||||
| L3e1a | C16185T | Behar 2008b | |||||||||||||||||
| L3e1a1 | G185A C8650T T16311C! | Behar 2008b | |||||||||||||||||
| L3e1a1a | G3438A | EU092749 | JN655807 | Behar 2008b | |||||||||||||||
| T152C! | Behar 2008b | ||||||||||||||||||
| L3e1a2 | T195C! G207A T5774a A9254G C11024T G14569A T16209C | JX303878 | EU092867 | Behar 2008b | |||||||||||||||
| L3e1a3 | G10398A | EU092960 | Behar 2008b | ||||||||||||||||
| L3e1a3a | C5255T G7337A | JX303872 | EU092709 | ||||||||||||||||
| L3e1b | A14926G T16325d | JN655794 | JX303759 | Behar 2008b | |||||||||||||||
| L3e1c | A3675G G5460A 8289.1CCCCCTCTACCCCCTCTA G8701A G14323A | EU092879 | EU092740 | Behar 2008b | |||||||||||||||
| L3e1d | T152C! C16176T | HM771171 | Behar 2008b | ||||||||||||||||
| L3e1d1 | C8703T G9300A T12738C | EU092862 | JX303847 | ||||||||||||||||
| L3e1d1a | A9327G | EU092693 | JX303886 | ||||||||||||||||
| L3e1e | T10370C | JQ045096 | Behar 2008b | ||||||||||||||||
| L3e1e1 | T14571a | EU092915 | AF346980 | ||||||||||||||||
| L3e1f | 8281-8289d | HM771172 | JN214448 | Behar 2012b | |||||||||||||||
| L3e1g | G1442A A4844G A5498G T5618C T8093C T10490C T11318C T12215C T16172C A16399G | JQ044847 | JQ045070 | ||||||||||||||||
| L3e2 | T195C! G14905A C16320T | Behar 2008b, Torroni 2006 | |||||||||||||||||
| L3e2a | T4823C A13105G! G14869A | EU092769 | EU092729 | Behar 2008b | |||||||||||||||
| L3e2a1 | C198T | ||||||||||||||||||
| L3e2a1a | A1737G C3852T C7196T A15924G | DQ305026 | DQ305027 | ||||||||||||||||
| L3e2a1b | T6413C | DQ305025 | DQ305029 | ||||||||||||||||
| L3e2a1b1 | A16399G | DQ305031 | JQ044801 | ||||||||||||||||
| L3e2a1b2 | A15076G T16311C! | HM771176 | HM771175 | ||||||||||||||||
| L3e2b | T16172C T16189C! | DQ341071 | EU935465 | Behar 2008b | |||||||||||||||
| L3e2b1 | A9377G | DQ305022 | |||||||||||||||||
| L3e2b1a | T2483C | JQ703138 | Behar 2008b, Behar 2012b | ||||||||||||||||
| L3e2b1a1 | T5580C | DQ305021 | AF347015 | ||||||||||||||||
| L3e2b1a2 | G3277A G12406A | JX303789 | JQ701829 | ||||||||||||||||
| L3e2b2 | G11377A | EU092784 | EU092777 | Behar 2008b | |||||||||||||||
| T152C! | DQ304998 | DQ305000 | |||||||||||||||||
| L3e2b3 | A6932G | DQ305008 | DQ305009 | ||||||||||||||||
| L3e3'4'5 | G750A | Behar 2008b | |||||||||||||||||
| L3e3'4 | G5262A | Behar 2008b | |||||||||||||||||
| L3e3 | T195C! C2000T T6524C G9554A T10667C A10816G A13101c A16265t | Behar 2008b | |||||||||||||||||
| L3e3a | 573.XC A10286G A12397G | DQ305012 | JN655812 | Behar 2008b | |||||||||||||||
| L3e3b | G4655A A12248G C13197T A13651G G15812A | DQ305011 | DQ305010 | Behar 2008b | |||||||||||||||
| L3e3b1 | G6261A | HM771231 | DQ305013 | ||||||||||||||||
| L3e3b2 | C16527T | AF346967 | HM771232 | ||||||||||||||||
| L3e3b3 | C16465T | JQ044850 | JQ044964 | ||||||||||||||||
| L3e4 | G3915A A5584G C11257T C13749T A16051G | EU092752 | Behar 2008b | ||||||||||||||||
| L3e4a | C16264T | EU092695 | JQ705285 | ||||||||||||||||
| L3e4a1 | C9490T | JQ705320 | JQ045125 | ||||||||||||||||
| L3e5 | T398C G8392A A16041G | JN655822 | FJ460533 | Behar 2008b, Torroni 2006 | |||||||||||||||
| L3e5a | G13317A | JN655798 | JN214452 | ||||||||||||||||
| L3i | T7645C | Behar 2008b | |||||||||||||||||
| L3i1 | A10679G T11260C C13800a G16153A | Behar 2008b | |||||||||||||||||
| L3i1a | A15758G (G16129A!) (T16223C) | JN655780 | DQ112958 | Behar 2008b | |||||||||||||||
| L3i1b | T2158C C13687T | DQ341069 | EU092923 | Behar 2008b, Torroni 2006 | |||||||||||||||
| L3i2 | T152C! A189G A5441G T8222C A14818G T15388C C16260T T16311C! | DQ341068 | JN655814 | Behar 2008b, Torroni 2006, Kivisild 2004 ("L3w") | |||||||||||||||
| L3k | T152C! A235G C494T G3918A T6620g A8649G T9467C G13135A C13992T G15314A | EU092822 | Behar 2008b | ||||||||||||||||
| L3k1 | A735G T4313C A9007t G9329A A13542G A13862G C16355T | JQ705310 | JN655789 | Behar 2012b | |||||||||||||||
| L3x | G3483A 5899.XC A6401G T8311C A8817G G13708A C16169T | Behar 2008b | |||||||||||||||||
| L3x1 | T204C G15172A C16278T! | JN655779 | Behar 2008b, Torroni 2006 | ||||||||||||||||
| T16311C! | JN655837 | ||||||||||||||||||
| L3x1b | C16256T | JN655782 | DQ341067 | ||||||||||||||||
| L3x2 | (A200G) A249d C494T A9941G C16193T T16195C | Behar 2008b | |||||||||||||||||
| L3x2a | C3435T T16223C | EU092944 | JN655776 | Behar 2008b | |||||||||||||||
| L3x2a1 | 368.1AGAA T6392C A7129G T16086C | DQ341066 | Behar 2008b, Torroni 2006 | ||||||||||||||||
| L3x2a1a | A9180G A13681G A13722G | JN655829 | EU092684 | Behar 2008b | |||||||||||||||
| L3x2b | T650C A9254G A15758G G15928A T16243C | EU092818 | HQ675033 | Behar 2008b | |||||||||||||||
| L3h | T7861C G9575A | Behar 2008b | |||||||||||||||||
| L3h1 | G1719A A4388G C5300T T9509C A11590G T16311C! | Behar 2008b | |||||||||||||||||
| L3h1a | T5492C | Behar 2008b | |||||||||||||||||
| L3h1a1 | (G73A) T8047C G8485A C12432T G13708A T13926C T14110C (G16129A!) (C16192T) (G16255A) (T16298C) | JN655830 | DQ112957 | Behar 2008b | |||||||||||||||
| L3h1a2 | C8781a | Behar 2008b | |||||||||||||||||
| L3h1a2a | T146C! T4688C T4742C C8943T T12175C T12519C A14587G C15646T A16399G | JN655840 | Behar 2008b | ||||||||||||||||
| L3h1a2a1 | G12236A C14862T | AF347000 | JN655824 | ||||||||||||||||
| L3h1a2b | C16270T | JN655788 | EU092753 | Behar 2008b | |||||||||||||||
| L3h1b | A189c T195C! A10044G G14410A C16256a | Behar 2008b | |||||||||||||||||
| L3h1b1 | A16284G | EU092828 | |||||||||||||||||
| L3h1b1a | T3777C C16179T | JN655775 | JN655799 | Behar 2008b, Torroni 2006 | |||||||||||||||
| L3h1b2 | C151T T152C! T294C A606G T990C A8842G T9758C C12882T T13437C G16129A! T16362C | EU092736 | GU455418 | ||||||||||||||||
| L3h2 | C150T T195C! T318C A3879G G5460A A5813G T5930C G8020A T9098C G9380A T9965C G11440A A12469G C13080T C13755T C16111T C16184T T16304C | JN655801 | DQ341080 | Behar 2008b, Torroni 2006 | |||||||||||||||
| M | T489C C10400T T14783C G15043A | JQ702247 | Behar 2012b | ||||||||||||||||
| N | G8701A C9540T G10398A C10873T A15301G! | ||||||||||||||||||